miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Populus trichocarpa



ABOUT THIS RECORD

ID: MNEST052428
species: Populus trichocarpa
source: PMRD, original name: ptc-miRf10606-akr

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGGTTGGGCGTGGACGCGTCTAGGT

miRNA*
GTGGACGCGTCCAGGTCTAACGTGG

mismatches: 4
bulges: 0

View larger
pre-miRNA
GTTGGGCGTGGACGCGTCCAGGTCTAACGTGGGGTTGGGCATTGTCGCGTTTAGACCTAATGTGGGGTTGGGCGTGGACGCGTCTAGGTACAAC

dot-bracket secondary structure
((((..(.((((((((((((.(((((((.(.(.(((((((.............).)))))).).).))))))).)))))))))))).)..))))


SIMILARITIES
miRBase no hits

PMRD ptc-miRf10605-akr: 2e-48

microPC no hits
UniProt no hits

RFAM no hits

Identical with: ptc-miRf10604-akr from PMRD (MNEST052426)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record





Liczniki na strone;